package uk.ac.leeds.ccg.cluster;
/** Grimson test parameters class
 */
import java.io.*;
import java.awt.*;
import java.awt.event.*;
public class GrimsonTimeParameters extends TimeParameters
{
    // Version id
    private static final String version = "$id$";

    // Members
    /**@param highrisk high risk threshold
     */
    private double highrisk; // high risk threshold

    // Constructors
    public GrimsonTimeParameters(){
	setDefaultTimeParameters();
    }

    public GrimsonTimeParameters(File file)
	throws IOException,FileNotFoundException{
        // Read into a stream tokenised buffered input stream
	StreamTokenizer st = new StreamTokenizer
	    ( new BufferedReader
		( new InputStreamReader
		    ( new FileInputStream (file))));
	System.out.println ("Setting Grimson parameters from "+file);
	st.nextToken();
	if (st.sval.equalsIgnoreCase("true")) {setAnimate(true);}
	else {setAnimate(false);}	
	st.nextToken();
	setHR((double)st.nval);
	st.nextToken();
	setNumBin((int)st.nval);
	st.nextToken();
        setStartTime((int)st.nval);
        st.nextToken();
        setEndTime((int)st.nval);
        st.nextToken();
	setSignificanceThreshold(st.nval);
    }

    public GrimsonTimeParameters(boolean animate,
			 double highrisk,
			 int numBin,
                         int minTime,
                         int maxTime,
			 double thresh){
	setAnimate(animate);
	setHR(highrisk);
	setNumBin(numBin);
        setStartTime(minTime);
        setEndTime(maxTime);
	setSignificanceThreshold(thresh);
    }

    // Methods
    public String toString(){
        return
	    "[animate "+getAnimate()+"]\n"+
	    "[High risk threshold "+getHR()+"]\n"+
	    "[Number of Bins "+getNumBin()+"]\n"+
            "[Earliest time start "+getStartTime()+"]\n"+
            "[Latest time end "+getEndTime()+"]\n";
    }

    // public Parameters getParameters() {return this;}

    public void setTimeParameters(boolean animate,
			      double highrisk,
			      int numBin,
                              int minTime,
                              int maxTime,
			      double thresh){
	setAnimate(animate);
	setHR(highrisk);
	setNumBin(numBin);
        setStartTime(minTime);
        setEndTime(maxTime);
	setSignificanceThreshold(thresh);
    }

    public void setDefaultTimeParameters(){
	setHR(2.);
	super.setDefaultTimeParameters();
    }

    public double getHR() {return highrisk;}
    public void setHR(double i) {highrisk=i;}

    public void writeTimeParameters(File file)
	throws IOException,FileNotFoundException{    
	PrintWriter pw = new PrintWriter
	    ( new BufferedWriter
		( new OutputStreamWriter
		    ( new FileOutputStream (file))));
	pw.println(getAnimate());
	pw.println(getHR());
	pw.println(getNumBin());
        pw.println(getStartTime());
        pw.println(getEndTime());
	pw.println(getSignificanceThreshold());
	System.out.println ("Parameters saved to "+file);
	pw.flush();
	pw.close();
    }
}